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LOC117351709 toll-like receptor 2 [ Geotrypetes seraphini ]

Gene ID: 117351709, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117351709
Gene description
toll-like receptor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
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Genomic context

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See LOC117351709 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 18 NC_047101.1 (38424586..38427380, complement)

Chromosome 18 - NC_047101.1Genomic Context describing neighboring genes Neighboring gene SLC35A4 upstream open reading frame protein-like Neighboring gene solute carrier family 35 member A4 Neighboring gene osmotic avoidance abnormal protein 3-like Neighboring gene NADH:ubiquinone oxidoreductase subunit A2 Neighboring gene IK cytokine

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047101.1 Chromosome 18 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipopolysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipopolysaccharide-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type I interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type II interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor 4 signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of lipopolysaccharide receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047101.1 Reference aGeoSer1.1 Primary Assembly

    Range
    38424586..38427380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033927433.1 → XP_033783324.1  toll-like receptor 2

    UniProtKB/TrEMBL
    A0A6P8PHI4
    Conserved Domains (3) summary
    PRK15370
    Location:173 → 359
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:192 → 218
    LRR_RI; leucine-rich repeat [structural motif]
    cl39015
    Location:46 → 254
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
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