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CHRNE cholinergic receptor nicotinic epsilon subunit [ Geotrypetes seraphini ]

Gene ID: 117350724, updated on 19-Mar-2024

Summary

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Gene symbol
CHRNE
Gene description
cholinergic receptor nicotinic epsilon subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
Orthologs
human mouse all
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Genomic context

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See CHRNE in Genome Data Viewer
Location:
chromosome: 16
Exon count:
13
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 16 NC_047099.1 (29451808..29505196, complement)

Chromosome 16 - NC_047099.1Genomic Context describing neighboring genes Neighboring gene misshapen like kinase 1 Neighboring gene eukaryotic translation initiation factor 4E type 2-like Neighboring gene glycoprotein Ib platelet subunit alpha Neighboring gene solute carrier family 25 member 11 Neighboring gene NFAT activating protein with ITAM motif 1 Neighboring gene ring finger protein 167

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047099.1 Chromosome 16 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047099.1 Reference aGeoSer1.1 Primary Assembly

    Range
    29451808..29505196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033925255.1 → XP_033781146.1  acetylcholine receptor subunit epsilon isoform X2

    UniProtKB/TrEMBL
    A0A6P8Q1L2
    Conserved Domains (2) summary
    cl28912
    Location:1 → 164
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))
    pfam02932
    Location:171 → 411
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  2. XM_033925253.1 → XP_033781144.1  acetylcholine receptor subunit epsilon isoform X1

    UniProtKB/TrEMBL
    A0A6P8PBI6
    Conserved Domains (2) summary
    cd19029
    Location:45 → 239
    LGIC_ECD_nAChR_G; extracellular domain of nicotinic acetylcholine receptor subunit gamma (CHRNG)
    pfam02932
    Location:246 → 486
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  3. XM_033925256.1 → XP_033781147.1  acetylcholine receptor subunit epsilon isoform X3

    UniProtKB/TrEMBL
    A0A6P8NXD6
    Conserved Domains (2) summary
    cl28912
    Location:24 → 148
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))
    pfam02932
    Location:155 → 395
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
Nucleotide Protein
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