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KIRREL1 kirre like nephrin family adhesion molecule 1 [ Geotrypetes seraphini ]

Gene ID: 117350079, updated on 19-Mar-2024

Summary

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Gene symbol
KIRREL1
Gene description
kirre like nephrin family adhesion molecule 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
Orthologs
human mouse all
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Genomic context

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See KIRREL1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
19
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 16 NC_047099.1 (42469624..42651688, complement)

Chromosome 16 - NC_047099.1Genomic Context describing neighboring genes Neighboring gene SLAM family member 8-like Neighboring gene ETS variant transcription factor 3 Neighboring gene signaling lymphocytic activation molecule-like Neighboring gene SLAM family member 5-like Neighboring gene SLAM family member 9-like Neighboring gene uncharacterized LOC117350082

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047099.1 Chromosome 16 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047099.1 Reference aGeoSer1.1 Primary Assembly

    Range
    42469624..42651688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033924016.1 → XP_033779907.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P8NU52
    Conserved Domains (5) summary
    pfam13927
    Location:336 → 401
    Ig_3; Immunoglobulin domain
    cd00096
    Location:353 → 357
    Ig; Ig strand B [structural motif]
    cd05759
    Location:150 → 247
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:419 → 516
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:50 → 144
    Ig; Immunoglobulin domain

  2. XM_033924017.1 → XP_033779908.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P8PYP4
    Conserved Domains (5) summary
    pfam13927
    Location:335 → 400
    Ig_3; Immunoglobulin domain
    cd00096
    Location:352 → 356
    Ig; Ig strand B [structural motif]
    cd05759
    Location:149 → 246
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:418 → 515
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:49 → 143
    Ig; Immunoglobulin domain

  3. XM_033924015.1 → XP_033779906.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P8NU52
    Conserved Domains (5) summary
    pfam13927
    Location:336 → 401
    Ig_3; Immunoglobulin domain
    cd00096
    Location:353 → 357
    Ig; Ig strand B [structural motif]
    cd05759
    Location:150 → 247
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:419 → 516
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:50 → 144
    Ig; Immunoglobulin domain

  4. XM_033924018.1 → XP_033779909.1  kin of IRRE-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P8P850
    Conserved Domains (5) summary
    pfam13927
    Location:308 → 373
    Ig_3; Immunoglobulin domain
    cd00096
    Location:325 → 329
    Ig; Ig strand B [structural motif]
    cd05759
    Location:122 → 219
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:391 → 488
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:22 → 116
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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