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GALNT17 polypeptide N-acetylgalactosaminyltransferase 17 [ Geotrypetes seraphini ]

Gene ID: 117348766, updated on 19-Mar-2024

Summary

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Gene symbol
GALNT17
Gene description
polypeptide N-acetylgalactosaminyltransferase 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
Orthologs
human mouse all
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Genomic context

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See GALNT17 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 15 NC_047098.1 (59421360..59783274)

Chromosome 15 - NC_047098.1Genomic Context describing neighboring genes Neighboring gene chromosome 15 C11orf54 homolog Neighboring gene myb-related transcription factor, partner of profilin-like Neighboring gene activator of transcription and developmental regulator AUTS2 Neighboring gene uncharacterized LOC117348767 Neighboring gene uncharacterized LOC117348971 Neighboring gene calneuron 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047098.1 Chromosome 15 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047098.1 Reference aGeoSer1.1 Primary Assembly

    Range
    59421360..59783274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033921217.1 → XP_033777108.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X1

    UniProtKB/TrEMBL
    A0A6P8NLZ2
    Conserved Domains (2) summary
    cd02510
    Location:182 → 481
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:494 → 618
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_033921216.1 → XP_033777107.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X1

    UniProtKB/TrEMBL
    A0A6P8NLZ2
    Conserved Domains (2) summary
    cd02510
    Location:182 → 481
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:494 → 618
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  3. XM_033921218.1 → XP_033777109.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X2

    UniProtKB/TrEMBL
    A0A6P8P0T4
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:467 → 591
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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