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LOC117346348 polypeptide N-acetylgalactosaminyltransferase 6-like [ Geotrypetes seraphini ]

Gene ID: 117346348, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117346348
Gene description
polypeptide N-acetylgalactosaminyltransferase 6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
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Genomic context

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Location:
chromosome: 12
Exon count:
22
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 12 NC_047095.1 (119197154..119252088)

Chromosome 12 - NC_047095.1Genomic Context describing neighboring genes Neighboring gene chromosome 12 C6orf47 homolog Neighboring gene uncharacterized LOC117346057 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 6-like Neighboring gene polypeptide N-acetylgalactosaminyltransferase 6-like Neighboring gene polypeptide N-acetylgalactosaminyltransferase 6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047095.1 Chromosome 12 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047095.1 Reference aGeoSer1.1 Primary Assembly

    Range
    119197154..119252088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033915753.1 → XP_033771644.1  polypeptide N-acetylgalactosaminyltransferase 6-like isoform X1

    UniProtKB/TrEMBL
    A0A6P8NM23
    Conserved Domains (2) summary
    cd02510
    Location:174 → 479
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:491 → 618
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_033915756.1 → XP_033771647.1  polypeptide N-acetylgalactosaminyltransferase 6-like isoform X3

    UniProtKB/TrEMBL
    A0A6P8N7X6
    Conserved Domains (2) summary
    cd02510
    Location:46 → 351
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:363 → 490
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_033915755.1 → XP_033771646.1  polypeptide N-acetylgalactosaminyltransferase 6-like isoform X2

    UniProtKB/TrEMBL
    A0A6P8NRV7
    Conserved Domains (2) summary
    cd02510
    Location:170 → 475
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:487 → 614
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_033915754.1 → XP_033771645.1  polypeptide N-acetylgalactosaminyltransferase 6-like isoform X2

    UniProtKB/TrEMBL
    A0A6P8NRV7
    Conserved Domains (2) summary
    cd02510
    Location:170 → 475
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:487 → 614
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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