U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117345646 E3 ubiquitin-protein ligase CBL-C-like [ Geotrypetes seraphini ]

Gene ID: 117345646, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC117345646
Gene description
E3 ubiquitin-protein ligase CBL-C-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117345646 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 11 NC_047094.1 (66462508..66508817, complement)

Chromosome 11 - NC_047094.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 234 member A Neighboring gene basal cell adhesion molecule-like Neighboring gene uncharacterized LOC117345795 Neighboring gene carcinoembryonic antigen-related cell adhesion molecule 4-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_047094.1 Chromosome 11 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphotyrosine residue binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of epidermal growth factor-activated receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase CBL-C-like; E3 ubiquitin-protein ligase CBL-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047094.1 Reference aGeoSer1.1 Primary Assembly

    Range
    66462508..66508817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033914584.1 → XP_033770475.1  E3 ubiquitin-protein ligase CBL-C-like isoform X1

    UniProtKB/TrEMBL
    A0A6P8NN27
    Conserved Domains (5) summary
    cd09920
    Location:229 → 325
    SH2_Cbl-b_TKB; Src homology 2 (SH2) domain found in the Cbl-b TKB domain
    cd16709
    Location:335 → 400
    RING-HC_Cbl-b; RING finger, HC subclass, found in E3 ubiquitin-protein ligase Cbl-b and similar proteins
    pfam02262
    Location:27 → 145
    Cbl_N; CBL proto-oncogene N-terminal domain 1
    pfam02761
    Location:152 → 235
    Cbl_N2; CBL proto-oncogene N-terminus, EF hand-like domain
    cl21463
    Location:694 → 732
    UBA_like_SF; UBA domain-like superfamily

  2. XM_033914585.1 → XP_033770476.1  E3 ubiquitin-protein ligase CBL-like isoform X2

    UniProtKB/TrEMBL
    A0A6P8P4W1
    Conserved Domains (4) summary
    cd09920
    Location:229 → 325
    SH2_Cbl-b_TKB; Src homology 2 (SH2) domain found in the Cbl-b TKB domain
    cd16709
    Location:335 → 400
    RING-HC_Cbl-b; RING finger, HC subclass, found in E3 ubiquitin-protein ligase Cbl-b and similar proteins
    pfam02262
    Location:27 → 145
    Cbl_N; CBL proto-oncogene N-terminal domain 1
    pfam02761
    Location:152 → 235
    Cbl_N2; CBL proto-oncogene N-terminus, EF hand-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases