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LOC117335915 prolyl 3-hydroxylase 1-like [ Pecten maximus ]

Gene ID: 117335915, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117335915
Gene description
prolyl 3-hydroxylase 1-like
See related
EnsemblRapid:LOC117335915
Gene type
protein coding
RefSeq status
MODEL
Organism
Pecten maximus
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten
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Genomic context

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See LOC117335915 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
100 current xPecMax1.1 (GCF_902652985.1) 10 NC_047024.1 (2947244..3012263)

Chromosome 10 - NC_047024.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 227-like Neighboring gene prolyl 3-hydroxylase 2-like Neighboring gene uncharacterized LOC117336408 Neighboring gene cinnamyl alcohol dehydrogenase 8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047024.1 Chromosome 10 Reference xPecMax1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pecten maximus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xPecMax1.1

Genomic

  1. NC_047024.1 Reference xPecMax1.1

    Range
    2947244..3012263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033896196.1 → XP_033752087.1  prolyl 3-hydroxylase 1-like

    Related
    XP_033752087.1, XM_033896196.1
    Conserved Domains (1) summary
    cl21496
    Location:690 → 891
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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