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LOC117330379 carbohydrate sulfotransferase 11-like [ Pecten maximus ]

Gene ID: 117330379, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117330379
Gene description
carbohydrate sulfotransferase 11-like
See related
EnsemblRapid:LOC117330379
Gene type
protein coding
RefSeq status
MODEL
Organism
Pecten maximus
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten
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Genomic context

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See LOC117330379 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
100 current xPecMax1.1 (GCF_902652985.1) 7 NC_047021.1 (25931659..25960337, complement)

Chromosome 7 - NC_047021.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase TBK1-like Neighboring gene extensin-2-like Neighboring gene uncharacterized LOC117330378 Neighboring gene complement C1q tumor necrosis factor-related protein 2-like Neighboring gene uncharacterized LOC117330382

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047021.1 Chromosome 7 Reference xPecMax1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pecten maximus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xPecMax1.1

Genomic

  1. NC_047021.1 Reference xPecMax1.1

    Range
    25931659..25960337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033888621.1 → XP_033744512.1  carbohydrate sulfotransferase 11-like isoform X3

    Related
    XP_033744512.1, XM_033888621.1
    Conserved Domains (1) summary
    pfam03567
    Location:117 → 343
    Sulfotransfer_2; Sulfotransferase family

  2. XM_033888619.1 → XP_033744510.1  carbohydrate sulfotransferase 11-like isoform X1

    Related
    XP_033744510.1, XM_033888619.1
    Conserved Domains (1) summary
    pfam03567
    Location:134 → 360
    Sulfotransfer_2; Sulfotransferase family

  3. XM_033888625.1 → XP_033744516.1  carbohydrate sulfotransferase 11-like isoform X4

    Related
    XP_033744516.1, XM_033888625.1
    Conserved Domains (1) summary
    pfam03567
    Location:105 → 331
    Sulfotransfer_2; Sulfotransferase family

  4. XM_033888623.1 → XP_033744514.1  carbohydrate sulfotransferase 11-like isoform X4

    Related
    XP_033744514.1, XM_033888623.1
    Conserved Domains (1) summary
    pfam03567
    Location:105 → 331
    Sulfotransfer_2; Sulfotransferase family

  5. XM_033888620.1 → XP_033744511.1  carbohydrate sulfotransferase 11-like isoform X2

    Related
    XP_033744511.1, XM_033888620.1
    Conserved Domains (1) summary
    pfam03567
    Location:126 → 352
    Sulfotransfer_2; Sulfotransferase family

  6. XM_033888624.1 → XP_033744515.1  carbohydrate sulfotransferase 11-like isoform X4

    Related
    XP_033744515.1, XM_033888624.1
    Conserved Domains (1) summary
    pfam03567
    Location:105 → 331
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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