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LOC117329985 zeta-sarcoglycan-like [ Pecten maximus ]

Gene ID: 117329985, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117329985
Gene description
zeta-sarcoglycan-like
See related
EnsemblRapid:LOC117329985
Gene type
protein coding
RefSeq status
MODEL
Organism
Pecten maximus
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten
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Genomic context

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See LOC117329985 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
100 current xPecMax1.1 (GCF_902652985.1) 6 NC_047020.1 (8518207..8548467)

Chromosome 6 - NC_047020.1Genomic Context describing neighboring genes Neighboring gene ribosome-binding protein 1-like Neighboring gene tumor suppressor candidate 3-like Neighboring gene uncharacterized LOC117328870 Neighboring gene brain tumor protein-like Neighboring gene uncharacterized LOC117328873

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047020.1 Chromosome 6 Reference xPecMax1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pecten maximus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xPecMax1.1

Genomic

  1. NC_047020.1 Reference xPecMax1.1

    Range
    8518207..8548467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033888218.1 → XP_033744109.1  zeta-sarcoglycan-like

    Related
    XP_033744109.1, XM_033888218.1
    Conserved Domains (1) summary
    pfam04790
    Location:20 → 284
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases