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LOC117315086 uncharacterized LOC117315086 [ Pecten maximus ]

Gene ID: 117315086, updated on 26-Jun-2024

Summary

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Gene symbol
LOC117315086
Gene description
uncharacterized LOC117315086
See related
EnsemblRapid:LOC117315086
Gene type
protein coding
RefSeq status
MODEL
Organism
Pecten maximus
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten
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Genomic context

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See LOC117315086 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
100 current xPecMax1.1 (GCF_902652985.1) 17 NC_047031.1 (7735882..7778546, complement)

Chromosome 17 - NC_047031.1Genomic Context describing neighboring genes Neighboring gene putative mediator of RNA polymerase II transcription subunit 26 Neighboring gene putative mediator of RNA polymerase II transcription subunit 26 Neighboring gene uncharacterized LOC117315088 Neighboring gene zinc finger protein 235-like Neighboring gene zinc finger protein 37 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047031.1 Chromosome 17 Reference xPecMax1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC117315086

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pecten maximus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xPecMax1.1

Genomic

  1. NC_047031.1 Reference xPecMax1.1

    Range
    7735882..7778546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033869233.1 → XP_033725124.1  uncharacterized protein LOC117315086 isoform X3

    Related
    XP_033725124.1, XM_033869233.1
    Conserved Domains (2) summary
    cl11394
    Location:669 → 971
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl15755
    Location:1352 → 1416
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_033869232.1 → XP_033725123.1  uncharacterized protein LOC117315086 isoform X2

    Related
    XP_033725123.1, XM_033869232.1
    Conserved Domains (2) summary
    cl11394
    Location:677 → 979
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl15755
    Location:1359 → 1423
    SAM_superfamily; SAM (Sterile alpha motif )

  3. XM_033869231.1 → XP_033725122.1  uncharacterized protein LOC117315086 isoform X1

    Related
    XP_033725122.1, XM_033869231.1
    Conserved Domains (2) summary
    cl11394
    Location:677 → 979
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl15755
    Location:1360 → 1424
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein
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