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LOC117314938 beta-1,3-galactosyltransferase 5-like [ Pecten maximus ]

Gene ID: 117314938, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117314938
Gene description
beta-1,3-galactosyltransferase 5-like
See related
EnsemblRapid:LOC117314938
Gene type
protein coding
RefSeq status
MODEL
Organism
Pecten maximus
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten
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Genomic context

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See LOC117314938 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
100 current xPecMax1.1 (GCF_902652985.1) 17 NC_047031.1 (30903415..30932301, complement)

Chromosome 17 - NC_047031.1Genomic Context describing neighboring genes Neighboring gene acetylcholinesterase-like Neighboring gene uncharacterized LOC117314937 Neighboring gene uncharacterized LOC117314940 Neighboring gene uncharacterized LOC117315806 Neighboring gene von Willebrand factor A domain-containing protein 7-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047031.1 Chromosome 17 Reference xPecMax1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pecten maximus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xPecMax1.1

Genomic

  1. NC_047031.1 Reference xPecMax1.1

    Range
    30903415..30932301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033869047.1 → XP_033724938.1  beta-1,3-galactosyltransferase 5-like isoform X1

    Related
    XP_033724938.1, XM_033869047.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

  2. XM_033869042.1 → XP_033724933.1  beta-1,3-galactosyltransferase 5-like isoform X1

    Related
    XP_033724933.1, XM_033869042.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

  3. XM_033869046.1 → XP_033724937.1  beta-1,3-galactosyltransferase 5-like isoform X1

    Related
    XP_033724937.1, XM_033869046.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

  4. XM_033869045.1 → XP_033724936.1  beta-1,3-galactosyltransferase 5-like isoform X1

    Related
    XP_033724936.1, XM_033869045.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

  5. XM_033869040.1 → XP_033724931.1  beta-1,3-galactosyltransferase 5-like isoform X1

    Related
    XP_033724931.1, XM_033869040.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

  6. XM_033869044.1 → XP_033724935.1  beta-1,3-galactosyltransferase 5-like isoform X1

    Related
    XP_033724935.1, XM_033869044.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

  7. XM_033869039.1 → XP_033724930.1  beta-1,3-galactosyltransferase 5-like isoform X1

    Related
    XP_033724930.1, XM_033869039.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

  8. XM_033869037.1 → XP_033724928.1  beta-1,3-galactosyltransferase 5-like isoform X1

    Related
    XP_033724928.1, XM_033869037.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

  9. XM_033869038.1 → XP_033724929.1  beta-1,3-galactosyltransferase 5-like isoform X1

    Related
    XP_033724929.1, XM_033869038.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

  10. XM_033869041.1 → XP_033724932.1  beta-1,3-galactosyltransferase 5-like isoform X2

    Related
    XP_033724932.1, XM_033869041.1
    Conserved Domains (1) summary
    cl21608
    Location:85 → 270
    Galactosyl_T; Galactosyltransferase

RNA

  1. XR_004529642.1 RNA Sequence

    Related
    XR_004529642.1

  2. XR_004529644.1 RNA Sequence

    Related
    XR_004529644.1

  3. XR_004529640.1 RNA Sequence

    Related
    XR_004529640.1

  4. XR_004529641.1 RNA Sequence

    Related
    XR_004529641.1

  5. XR_004529643.1 RNA Sequence

    Related
    XR_004529643.1
Nucleotide Protein
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