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capn3b calpain 3b [ Epinephelus lanceolatus (giant grouper) ]

Gene ID: 117270774, updated on 10-Apr-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
EnsemblRapid:ENSELGG00000012151
Gene type
protein coding
RefSeq status
MODEL
Organism
Epinephelus lanceolatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ASM528154v1 (GCF_005281545.1) 18 NC_047008.1 (20962605..20987206)

Chromosome 18 - NC_047008.1Genomic Context describing neighboring genes Neighboring gene macoilin Neighboring gene nuclear receptor binding protein 1 Neighboring gene zinc finger protein 106-like Neighboring gene churchill domain containing 1 Neighboring gene tau tubulin kinase 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047008.1 Chromosome 18 Reference ASM528154v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Epinephelus lanceolatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM528154v1 Primary Assembly

Genomic

  1. NC_047008.1 Reference ASM528154v1 Primary Assembly

    Range
    20962605..20987206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033648628.1 → XP_033504519.1  calpain-3b isoform X1

    Related
    ENSELGP00000026276.1, ENSELGT00000027767.1
    Conserved Domains (4) summary
    cl25352
    Location:601 → 769
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:76 → 370
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:391 → 529
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:538 → 579
    Calpain_u2; Unstructured region on Calpain-3

  2. XM_033648629.1 → XP_033504520.1  calpain-3b isoform X2

    Related
    ENSELGP00000026277.1, ENSELGT00000027768.1
    Conserved Domains (4) summary
    cl25352
    Location:593 → 761
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:76 → 370
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:391 → 529
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:538 → 571
    Calpain_u2; Unstructured region on Calpain-3
Nucleotide Protein
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