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capn3a calpain 3a, (p94) [ Epinephelus lanceolatus (giant grouper) ]

Gene ID: 117267460, updated on 10-Apr-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
See related
EnsemblRapid:ENSELGG00000020295
Gene type
protein coding
RefSeq status
MODEL
Organism
Epinephelus lanceolatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: 15
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM528154v1 (GCF_005281545.1) 15 NC_047005.1 (34376148..34395222)

Chromosome 15 - NC_047005.1Genomic Context describing neighboring genes Neighboring gene A kinase (PRKA) anchor protein 6 Neighboring gene glucosidase, alpha; neutral C Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047005.1 Chromosome 15 Reference ASM528154v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Epinephelus lanceolatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM528154v1 Primary Assembly

Genomic

  1. NC_047005.1 Reference ASM528154v1 Primary Assembly

    Range
    34376148..34395222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033643381.1 → XP_033499272.1  calpain-3 isoform X1

    Conserved Domains (3) summary
    cl25352
    Location:545 → 724
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 510
    Calpain_III; Calpain large subunit, domain III

  2. XM_033643382.1 → XP_033499273.1  calpain-3 isoform X2

    Related
    ENSELGP00000042363.1, ENSELGT00000045972.1
    Conserved Domains (3) summary
    cl25352
    Location:545 → 721
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 510
    Calpain_III; Calpain large subunit, domain III

  3. XM_033643383.1 → XP_033499274.1  calpain-3 isoform X3

    Conserved Domains (3) summary
    cl25352
    Location:545 → 716
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 510
    Calpain_III; Calpain large subunit, domain III

  4. XM_033643384.1 → XP_033499275.1  calpain-3 isoform X4

    Related
    ENSELGP00000042355.1, ENSELGT00000045956.1
    Conserved Domains (3) summary
    cl25352
    Location:545 → 713
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 510
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
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