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spon2b spondin 2b, extracellular matrix protein [ Epinephelus lanceolatus (giant grouper) ]

Gene ID: 117261264, updated on 10-Apr-2024

Summary

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Gene symbol
spon2b
Gene description
spondin 2b, extracellular matrix protein
See related
EnsemblRapid:ENSELGG00000000463
Gene type
protein coding
RefSeq status
MODEL
Organism
Epinephelus lanceolatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus
Orthologs
human zebrafish all
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Genomic context

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See spon2b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM528154v1 (GCF_005281545.1) 10 NC_047000.1 (36197072..36206618, complement)

Chromosome 10 - NC_047000.1Genomic Context describing neighboring genes Neighboring gene transmembrane emp24 domain-containing protein 11 Neighboring gene probable E3 SUMO-protein ligase RNF212 Neighboring gene uncharacterized LOC117261268 Neighboring gene C-terminal-binding protein 1 Neighboring gene macrophage erythroblast attacher, E3 ubiquitin ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047000.1 Chromosome 10 Reference ASM528154v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spondin-2b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Epinephelus lanceolatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM528154v1 Primary Assembly

Genomic

  1. NC_047000.1 Reference ASM528154v1 Primary Assembly

    Range
    36197072..36206618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033633608.1 → XP_033489499.1  spondin-2b

    Related
    ENSELGP00000000835.1, ENSELGT00000000873.1
    Conserved Domains (2) summary
    pfam06468
    Location:46 → 233
    Spond_N; Spondin_N
    pfam19028
    Location:285 → 337
    TSP1_spondin; Spondin-like TSP1 domain
Nucleotide Protein
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