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ano5b anoctamin 5b [ Epinephelus lanceolatus (giant grouper) ]

Gene ID: 117254816, updated on 10-Apr-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
See related
EnsemblRapid:ENSELGG00000012197
Gene type
protein coding
RefSeq status
MODEL
Organism
Epinephelus lanceolatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM528154v1 (GCF_005281545.1) 1 NC_046991.1 (38992211..39032372, complement)

Chromosome 1 - NC_046991.1Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2b Neighboring gene solute carrier family 17 member 6b Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene U2 spliceosomal RNA Neighboring gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase Neighboring gene eukaryotic translation initiation factor 3, subunit Jb

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046991.1 Chromosome 1 Reference ASM528154v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Epinephelus lanceolatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM528154v1 Primary Assembly

Genomic

  1. NC_046991.1 Reference ASM528154v1 Primary Assembly

    Range
    38992211..39032372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033623246.1 → XP_033479137.1  anoctamin-5b isoform X2

    Related
    ENSELGP00000026375.1, ENSELGT00000027866.1
    Conserved Domains (2) summary
    pfam04547
    Location:279 → 862
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:59 → 276
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_033623240.1 → XP_033479131.1  anoctamin-5b isoform X1

    Related
    ENSELGP00000026373.1, ENSELGT00000027864.1
    Conserved Domains (2) summary
    pfam04547
    Location:294 → 877
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:74 → 291
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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