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galnt9 polypeptide N-acetylgalactosaminyltransferase 9 [ Epinephelus lanceolatus (giant grouper) ]

Gene ID: 117252827, updated on 10-Apr-2024

Summary

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Gene symbol
galnt9
Gene description
polypeptide N-acetylgalactosaminyltransferase 9
See related
EnsemblRapid:ENSELGG00000015564
Gene type
protein coding
RefSeq status
MODEL
Organism
Epinephelus lanceolatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus
Orthologs
human zebrafish all
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Genomic context

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See galnt9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM528154v1 (GCF_005281545.1) 4 NC_046994.1 (36037867..36155078)

Chromosome 4 - NC_046994.1Genomic Context describing neighboring genes Neighboring gene semaphorin-4C-like Neighboring gene fibrosin-like 1 Neighboring gene ATPase family AAA domain containing 1a Neighboring gene 5-hydroxytryptamine (serotonin) receptor 7c

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046994.1 Chromosome 4 Reference ASM528154v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Epinephelus lanceolatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM528154v1 Primary Assembly

Genomic

  1. NC_046994.1 Reference ASM528154v1 Primary Assembly

    Range
    36037867..36155078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033620029.1 → XP_033475920.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    Related
    ENSELGP00000033238.1, ENSELGT00000035434.1
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:465 → 593
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_033620032.1 → XP_033475923.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:10 → 309
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:320 → 448
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_033620031.1 → XP_033475922.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:10 → 309
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:320 → 448
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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