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hs6st3b heparan sulfate 6-O-sulfotransferase 3b [ Epinephelus lanceolatus (giant grouper) ]

Gene ID: 117251092, updated on 10-Apr-2024

Summary

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Gene symbol
hs6st3b
Gene description
heparan sulfate 6-O-sulfotransferase 3b
See related
EnsemblRapid:ENSELGG00000019868
Gene type
protein coding
RefSeq status
MODEL
Organism
Epinephelus lanceolatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus
Orthologs
human zebrafish all
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Genomic context

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See hs6st3b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM528154v1 (GCF_005281545.1) 3 NC_046993.1 (20048768..20168841)

Chromosome 3 - NC_046993.1Genomic Context describing neighboring genes Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 3a Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene muscleblind-like protein 2a Neighboring gene ras-related protein Rap-2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046993.1 Chromosome 3 Reference ASM528154v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 3-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Epinephelus lanceolatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM528154v1 Primary Assembly

Genomic

  1. NC_046993.1 Reference ASM528154v1 Primary Assembly

    Range
    20048768..20168841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033617077.1 → XP_033472968.1  heparan-sulfate 6-O-sulfotransferase 3-B

    Related
    ENSELGP00000041508.1, ENSELGT00000045011.1
    Conserved Domains (1) summary
    pfam03567
    Location:94 → 357
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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