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sotv exostosin glycosyltransferase sotv [ Bombus vosnesenskii ]

Gene ID: 117239137, updated on 10-Oct-2024

Summary

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Gene symbol
sotv
Gene description
exostosin glycosyltransferase sotv
See related
EnsemblRapid:ENSBVOG00000018959
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus vosnesenskii
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
Orthologs
fruit fly honey bee all
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Genomic context

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See sotv in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Bvos_JDL3184-5_v1.1 (GCF_011952255.1) Unplaced Scaffold NW_022883264.1 (539814..543800, complement)

NW_022883264.1Genomic Context describing neighboring genes Neighboring gene sentrin-specific protease 1-like Neighboring gene Taspase 1 Neighboring gene RNA-binding motif protein, X-linked 2-like Neighboring gene Katanin 60 Neighboring gene putative uncharacterized protein DDB_G0282133

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022883264 Unplaced Scaffold Reference Bvos_JDL3184-5_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus vosnesenskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bvos_JDL3184-5_v1.1

Genomic

  1. NW_022883264.1 Reference Bvos_JDL3184-5_v1.1

    Range
    539814..543800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033504485.1 → XP_033360376.1  exostosin-2 isoform X1

    UniProtKB/TrEMBL
    A0A6J3L761
    Related
    ENSBVOP00000031336.1, ENSBVOT00000038962.1
    Conserved Domains (2) summary
    pfam03016
    Location:97 → 373
    Exostosin; Exostosin family
    pfam09258
    Location:446 → 687
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_033504487.1 → XP_033360378.1  exostosin-2 isoform X2

    UniProtKB/TrEMBL
    A0A6J3L419
    Conserved Domains (2) summary
    pfam03016
    Location:97 → 373
    Exostosin; Exostosin family
    pfam09258
    Location:446 → 592
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases