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Scgdelta sarcoglycan delta [ Bombus vosnesenskii ]

Gene ID: 117234727, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus vosnesenskii
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Bvos_JDL3184-5_v1.1 (GCF_011952255.1) Unplaced Scaffold NW_022882957.1 (578618..797078, complement)

NW_022882957.1Genomic Context describing neighboring genes Neighboring gene protein Cep78 homolog Neighboring gene uncharacterized LOC117234728 Neighboring gene phosphodiesterase 8 Neighboring gene Down syndrome cell adhesion molecule-like protein Dscam2 Neighboring gene tyrosine-protein phosphatase 99A-like Neighboring gene uncharacterized LOC117234764

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022882957 Unplaced Scaffold Reference Bvos_JDL3184-5_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus vosnesenskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bvos_JDL3184-5_v1.1

Genomic

  1. NW_022882957.1 Reference Bvos_JDL3184-5_v1.1

    Range
    578618..797078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033496217.1 → XP_033352108.1  zeta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A6J3KG29
    Conserved Domains (1) summary
    pfam04790
    Location:79 → 350
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_033496214.1 → XP_033352105.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6J3KGS7
    Conserved Domains (1) summary
    pfam04790
    Location:130 → 401
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_033496211.1 → XP_033352102.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6J3KGS7
    Conserved Domains (1) summary
    pfam04790
    Location:130 → 401
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_033496212.1 → XP_033352103.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6J3KGS7
    Conserved Domains (1) summary
    pfam04790
    Location:130 → 401
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_033496213.1 → XP_033352104.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6J3KGS7
    Conserved Domains (1) summary
    pfam04790
    Location:130 → 401
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_033496218.1 → XP_033352109.1  zeta-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A6J3KG57
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 322
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_033496215.1 → XP_033352106.1  zeta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6J3KIG0
    Conserved Domains (1) summary
    pfam04790
    Location:89 → 360
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_033496216.1 → XP_033352107.1  zeta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A6J3KG50
    Conserved Domains (1) summary
    pfam04790
    Location:89 → 360
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  9. XM_033496221.1 → XP_033352112.1  zeta-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A6J3KG57
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 322
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  10. XM_033496220.1 → XP_033352111.1  zeta-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A6J3KG57
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 322
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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