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babo TGF-beta receptor type-1 babo [ Bombus bifarius ]

Gene ID: 117216227, updated on 10-Oct-2024

Summary

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Gene symbol
babo
Gene description
TGF-beta receptor type-1 babo
See related
EnsemblRapid:ENSBBSG00000002466
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus bifarius
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
Orthologs
fruit fly honey bee all
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Genomic context

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See babo in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Bbif_JDL3187 (GCF_011952205.1) Unplaced Scaffold NW_022885576.1 (365534..436117, complement)

NW_022885576.1Genomic Context describing neighboring genes Neighboring gene farnesol dehydrogenase-like Neighboring gene uncharacterized LOC117216231 Neighboring gene ribosomal protein L7A Neighboring gene UDP-glucose 6-dehydrogenase sgl

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022885576 Unplaced Scaffold Reference Bbif_JDL3187

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables activin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables activin receptor activity, type I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of activin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TGF-beta receptor type-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus bifarius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bbif_JDL3187

Genomic

  1. NW_022885576.1 Reference Bbif_JDL3187

    Range
    365534..436117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033462807.1 → XP_033318698.1  TGF-beta receptor type-1 isoform X3

    UniProtKB/TrEMBL
    A0A6P8NC33
    Conserved Domains (3) summary
    smart00467
    Location:194 → 223
    GS; GS motif
    cd14143
    Location:227 → 512
    STKc_TGFbR1_ACVR1b_ACVR1c; Catalytic domain of the Serine/Threonine Kinases, Transforming Growth Factor beta Type I Receptor and Activin Type IB/IC Receptors
    pfam01064
    Location:41 → 105
    Activin_recp; Activin types I and II receptor domain

  2. XM_033462806.1 → XP_033318697.1  TGF-beta receptor type-1 isoform X2

    UniProtKB/TrEMBL
    A0A6P8NXG8
    Conserved Domains (3) summary
    smart00467
    Location:198 → 226
    GS; GS motif
    cd14143
    Location:230 → 515
    STKc_TGFbR1_ACVR1b_ACVR1c; Catalytic domain of the Serine/Threonine Kinases, Transforming Growth Factor beta Type I Receptor and Activin Type IB/IC Receptors
    pfam01064
    Location:41 → 113
    Activin_recp; Activin types I and II receptor domain

  3. XM_033462805.1 → XP_033318696.1  TGF-beta receptor type-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P8MXN3
    Conserved Domains (3) summary
    smart00467
    Location:198 → 227
    GS; GS motif
    cd14143
    Location:231 → 516
    STKc_TGFbR1_ACVR1b_ACVR1c; Catalytic domain of the Serine/Threonine Kinases, Transforming Growth Factor beta Type I Receptor and Activin Type IB/IC Receptors
    pfam01064
    Location:41 → 113
    Activin_recp; Activin types I and II receptor domain

  4. XM_033462810.1 → XP_033318701.1  TGF-beta receptor type-1 isoform X6

    UniProtKB/TrEMBL
    A0A6P8MXN8
    Conserved Domains (3) summary
    smart00467
    Location:181 → 210
    GS; GS motif
    cd14143
    Location:214 → 499
    STKc_TGFbR1_ACVR1b_ACVR1c; Catalytic domain of the Serine/Threonine Kinases, Transforming Growth Factor beta Type I Receptor and Activin Type IB/IC Receptors
    pfam01064
    Location:41 → 105
    Activin_recp; Activin types I and II receptor domain

  5. XM_033462809.1 → XP_033318700.1  TGF-beta receptor type-1 isoform X5

    UniProtKB/TrEMBL
    A0A6P8NWQ4
    Conserved Domains (3) summary
    smart00467
    Location:185 → 214
    GS; GS motif
    cd14143
    Location:218 → 503
    STKc_TGFbR1_ACVR1b_ACVR1c; Catalytic domain of the Serine/Threonine Kinases, Transforming Growth Factor beta Type I Receptor and Activin Type IB/IC Receptors
    pfam01064
    Location:41 → 113
    Activin_recp; Activin types I and II receptor domain

  6. XM_033462808.1 → XP_033318699.1  TGF-beta receptor type-1 isoform X4

    UniProtKB/TrEMBL
    A0A6P8NES3
    Conserved Domains (3) summary
    smart00467
    Location:192 → 221
    GS; GS motif
    cd14143
    Location:225 → 510
    STKc_TGFbR1_ACVR1b_ACVR1c; Catalytic domain of the Serine/Threonine Kinases, Transforming Growth Factor beta Type I Receptor and Activin Type IB/IC Receptors
    pfam01064
    Location:41 → 121
    Activin_recp; Activin types I and II receptor domain

  7. XM_033462811.1 → XP_033318702.1  TGF-beta receptor type-1 isoform X7

    UniProtKB/TrEMBL
    A0A6P8NXH5
    Related
    ENSBBSP00000001847.1, ENSBBST00000009650.1
    Conserved Domains (3) summary
    smart00467
    Location:179 → 208
    GS; GS motif
    cd14143
    Location:212 → 497
    STKc_TGFbR1_ACVR1b_ACVR1c; Catalytic domain of the Serine/Threonine Kinases, Transforming Growth Factor beta Type I Receptor and Activin Type IB/IC Receptors
    pfam01064
    Location:41 → 108
    Activin_recp; Activin types I and II receptor domain
Nucleotide Protein
Heading Accession and Version

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