U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117212581 ski oncogene [ Bombus bifarius ]

Gene ID: 117212581, updated on 1-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC117212581
Gene description
ski oncogene
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus bifarius
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
Orthologs
honey bee all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117212581 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Bbif_JDL3187 (GCF_011952205.1) Unplaced Scaffold NW_022884593.1 (346494..351546, complement)

NW_022884593.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117212587 Neighboring gene uncharacterized LOC117212594 Neighboring gene Dachs ligand with SH3s Neighboring gene pre-mRNA-splicing factor CWC22 homolog Neighboring gene protein kinase C iota type

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022884593 Unplaced Scaffold Reference Bbif_JDL3187

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SMAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ski oncogene

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bombus bifarius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bbif_JDL3187

Genomic

  1. NW_022884593.1 Reference Bbif_JDL3187

    Range
    346494..351546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033457486.1 → XP_033313377.1  ski oncogene

    UniProtKB/TrEMBL
    A0A6P8NFG4
    Conserved Domains (2) summary
    pfam08782
    Location:260 → 349
    c-SKI_SMAD_bind; c-SKI Smad4 binding domain
    cd21079
    Location:135 → 225
    DHD_Ski_Sno; Dachshund-homology domain found in Ski, Ski-like protein (Sno), and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases