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LOC117124948 procollagen galactosyltransferase 2-like [ Anneissia japonica ]

Gene ID: 117124948, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117124948
Gene description
procollagen galactosyltransferase 2-like
See related
EnsemblRapid:LOC117124948
Gene type
protein coding
RefSeq status
MODEL
Organism
Anneissia japonica
Lineage
Eukaryota; Metazoa; Echinodermata; Pelmatozoa; Crinoidea; Articulata; Comatulida; Comatulidae; Comatulinae; Anneissia
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Genomic context

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See LOC117124948 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1163010v1 (GCF_011630105.1) Unplaced Scaffold NW_022757925.1 (312775..375825, complement)

NW_022757925.1Genomic Context describing neighboring genes Neighboring gene N(G),N(G)-dimethylarginine dimethylaminohydrolase 1-like Neighboring gene uncharacterized LOC117124937 Neighboring gene uncharacterized LOC117124950 Neighboring gene uncharacterized LOC117124949 Neighboring gene uncharacterized LOC117124946

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022757925 Unplaced Scaffold Reference ASM1163010v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anneissia japonica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1163010v1

Genomic

  1. NW_022757925.1 Reference ASM1163010v1

    Range
    312775..375825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033271288.1 → XP_033127179.1  procollagen galactosyltransferase 2-like isoform X2

    Related
    XP_033127179.1, XM_033271288.1
    Conserved Domains (2) summary
    cd06532
    Location:321 → 503
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:36 → 81
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_033271287.1 → XP_033127178.1  procollagen galactosyltransferase 2-like isoform X1

    Related
    XP_033127178.1, XM_033271287.1
    Conserved Domains (2) summary
    cd06532
    Location:321 → 503
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:36 → 81
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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