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LOC117123813 polypeptide N-acetylgalactosaminyltransferase 11-like [ Anneissia japonica ]

Gene ID: 117123813, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117123813
Gene description
polypeptide N-acetylgalactosaminyltransferase 11-like
See related
EnsemblRapid:LOC117123813
Gene type
protein coding
RefSeq status
MODEL
Organism
Anneissia japonica
Lineage
Eukaryota; Metazoa; Echinodermata; Pelmatozoa; Crinoidea; Articulata; Comatulida; Comatulidae; Comatulinae; Anneissia
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Genomic context

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See LOC117123813 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1163010v1 (GCF_011630105.1) Unplaced Scaffold NW_022756005.1 (61312..78721, complement)

NW_022756005.1Genomic Context describing neighboring genes Neighboring gene hyalin-like Neighboring gene uncharacterized LOC117123823 Neighboring gene kelch-like protein 6 Neighboring gene glycine--tRNA ligase-like Neighboring gene branched-chain-amino-acid aminotransferase-like protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022756005 Unplaced Scaffold Reference ASM1163010v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Notch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anneissia japonica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1163010v1

Genomic

  1. NW_022756005.1 Reference ASM1163010v1

    Range
    61312..78721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033269835.1 → XP_033125726.1  polypeptide N-acetylgalactosaminyltransferase 11-like

    Related
    XP_033125726.1, XM_033269835.1
    Conserved Domains (2) summary
    cd02510
    Location:169 → 466
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:494 → 614
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_033269834.1 → XP_033125725.1  polypeptide N-acetylgalactosaminyltransferase 11-like

    Related
    XP_033125725.1, XM_033269834.1
    Conserved Domains (2) summary
    cd02510
    Location:169 → 466
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:494 → 614
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_033269833.1 → XP_033125724.1  polypeptide N-acetylgalactosaminyltransferase 11-like

    Related
    XP_033125724.1, XM_033269833.1
    Conserved Domains (2) summary
    cd02510
    Location:169 → 466
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:494 → 614
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_033269832.1 → XP_033125723.1  polypeptide N-acetylgalactosaminyltransferase 11-like

    Related
    XP_033125723.1, XM_033269832.1
    Conserved Domains (2) summary
    cd02510
    Location:169 → 466
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:494 → 614
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  5. XM_033269836.1 → XP_033125727.1  polypeptide N-acetylgalactosaminyltransferase 11-like

    Related
    XP_033125727.1, XM_033269836.1
    Conserved Domains (2) summary
    cd02510
    Location:169 → 466
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:494 → 614
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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