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LOC117121814 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like [ Anneissia japonica ]

Gene ID: 117121814, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117121814
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like
See related
EnsemblRapid:LOC117121814
Gene type
protein coding
RefSeq status
MODEL
Organism
Anneissia japonica
Lineage
Eukaryota; Metazoa; Echinodermata; Pelmatozoa; Crinoidea; Articulata; Comatulida; Comatulidae; Comatulinae; Anneissia
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Genomic context

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See LOC117121814 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1163010v1 (GCF_011630105.1) Unplaced Scaffold NW_022751777.1 (142670..196007)

NW_022751777.1Genomic Context describing neighboring genes Neighboring gene stearoyl-CoA desaturase 5-like Neighboring gene stearoyl-CoA desaturase 5-like Neighboring gene ankyrin-3-like Neighboring gene uncharacterized LOC117121856

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022751777 Unplaced Scaffold Reference ASM1163010v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anneissia japonica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1163010v1

Genomic

  1. NW_022751777.1 Reference ASM1163010v1

    Range
    142670..196007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033267122.1 → XP_033123013.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

    Related
    XP_033123013.1, XM_033267122.1
    Conserved Domains (2) summary
    pfam00685
    Location:602 → 847
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:68 → 513
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_033267121.1 → XP_033123012.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

    Related
    XP_033123012.1, XM_033267121.1
    Conserved Domains (2) summary
    pfam00685
    Location:602 → 847
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:68 → 513
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_033267120.1 → XP_033123011.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

    Related
    XP_033123011.1, XM_033267120.1
    Conserved Domains (2) summary
    pfam00685
    Location:602 → 847
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:68 → 513
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

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