U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117112148 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like [ Anneissia japonica ]

Gene ID: 117112148, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC117112148
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like
See related
EnsemblRapid:LOC117112148
Gene type
protein coding
RefSeq status
MODEL
Organism
Anneissia japonica
Lineage
Eukaryota; Metazoa; Echinodermata; Pelmatozoa; Crinoidea; Articulata; Comatulida; Comatulidae; Comatulinae; Anneissia
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117112148 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM1163010v1 (GCF_011630105.1) Unplaced Scaffold NW_022723260.1 (434811..443462)

NW_022723260.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIF28P Neighboring gene arachidonate 5-lipoxygenase-like Neighboring gene glucose 1-dehydrogenase-like Neighboring gene substance-P receptor-like Neighboring gene kelch-like protein 7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022723260 Unplaced Scaffold Reference ASM1163010v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Anneissia japonica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1163010v1

Genomic

  1. NW_022723260.1 Reference ASM1163010v1

    Range
    434811..443462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033255210.1 → XP_033111101.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like isoform X2

    Related
    XP_033111101.1, XM_033255210.1
    Conserved Domains (1) summary
    cl21608
    Location:180 → 280
    Galactosyl_T; Galactosyltransferase

  2. XM_033255209.1 → XP_033111100.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like isoform X1

    Related
    XP_033111100.1, XM_033255209.1
    Conserved Domains (1) summary
    cl21608
    Location:190 → 290
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases