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LOC117101404 host cell factor 2-like [ Anneissia japonica ]

Gene ID: 117101404, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117101404
Gene description
host cell factor 2-like
See related
EnsemblRapid:LOC117101404
Gene type
protein coding
RefSeq status
MODEL
Organism
Anneissia japonica
Lineage
Eukaryota; Metazoa; Echinodermata; Pelmatozoa; Crinoidea; Articulata; Comatulida; Comatulidae; Comatulinae; Anneissia
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Genomic context

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See LOC117101404 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM1163010v1 (GCF_011630105.1) Unplaced Scaffold NW_022695194.1 (871233..900085)

NW_022695194.1Genomic Context describing neighboring genes Neighboring gene FERM domain-containing protein 4A-like Neighboring gene FERM domain-containing protein 4A-like Neighboring gene PX domain-containing protein kinase-like protein Neighboring gene pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022695194 Unplaced Scaffold Reference ASM1163010v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anneissia japonica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1163010v1

Genomic

  1. NW_022695194.1 Reference ASM1163010v1

    Range
    871233..900085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033241380.1 → XP_033097271.1  host cell factor 2-like isoform X1

    Related
    XP_033097271.1, XM_033241380.1
    Conserved Domains (3) summary
    PLN02193
    Location:7 → 311
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1238 → 1340
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:189 → 242
    Kelch; KELCH repeat [structural motif]

  2. XM_033241381.1 → XP_033097272.1  host cell factor 2-like isoform X2

    Related
    XP_033097272.1, XM_033241381.1
    Conserved Domains (4) summary
    PLN02193
    Location:7 → 311
    PLN02193; nitrile-specifier protein
    PRK13914
    Location:1021 → 1129
    PRK13914; invasion associated endopeptidase
    cd00063
    Location:1234 → 1336
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:189 → 242
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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