U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117038149 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3-like [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117038149, updated on 30-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
LOC117038149
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3-like
See related
EnsemblRapid:ENSRFEG00010018567
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117038149 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 18 NC_046301.1 (2718682..2827818)

Chromosome 18 - NC_046301.1Genomic Context describing neighboring genes Neighboring gene translocation associated membrane protein 1 like 1 Neighboring gene 28S ribosomal protein S10, mitochondrial-like Neighboring gene uncharacterized LOC117038039 Neighboring gene small nucleolar RNA SNORA24 Neighboring gene serine protease 12

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_046301.1 Chromosome 18 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046301.1 Reference mRhiFer1_v1.p

    Range
    2718682..2827818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033134829.1 → XP_032990720.1  LOW QUALITY PROTEIN: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3-like

    UniProtKB/TrEMBL
    A0A7J7U1F4
    Related
    ENSRFEP00010028447.2, ENSRFET00010030885.2
    Conserved Domains (2) summary
    pfam00685
    Location:597 → 848
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 508
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases