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CLGN calmegin [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117037984, updated on 30-Mar-2024

Summary

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Gene symbol
CLGN
Gene description
calmegin
See related
EnsemblRapid:ENSRFEG00010012509
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See CLGN in Genome Data Viewer
Location:
chromosome: 18
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 18 NC_046301.1 (16025877..16071059, complement)

Chromosome 18 - NC_046301.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117038170 Neighboring gene short coiled-coil protein Neighboring gene MGAT4 family member D Neighboring gene ELMO domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046301.1 Chromosome 18 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmegin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046301.1 Reference mRhiFer1_v1.p

    Range
    16025877..16071059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033134547.1 → XP_032990438.1  calmegin isoform X2

    UniProtKB/TrEMBL
    A0A7J7TZC9
    Conserved Domains (1) summary
    pfam00262
    Location:62 → 429
    Calreticulin; Calreticulin family

  2. XM_033134546.1 → XP_032990437.1  calmegin isoform X1

    UniProtKB/TrEMBL
    A0A671F496, A0A7J7TZC9
    Conserved Domains (1) summary
    pfam00262
    Location:62 → 429
    Calreticulin; Calreticulin family

  3. XM_033134545.1 → XP_032990436.1  calmegin isoform X1

    UniProtKB/TrEMBL
    A0A671F496, A0A7J7TZC9
    Related
    ENSRFEP00010039179.1, ENSRFET00010048338.1
    Conserved Domains (1) summary
    pfam00262
    Location:62 → 429
    Calreticulin; Calreticulin family
Nucleotide Protein
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