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SPTSSB serine palmitoyltransferase small subunit B [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117037296, updated on 19-Jun-2024

Summary

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Gene symbol
SPTSSB
Gene description
serine palmitoyltransferase small subunit B
See related
EnsemblRapid:ENSRFEG00010002709
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See SPTSSB in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 2 NC_046285.1 (78674631..78703445)

Chromosome 2 - NC_046285.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium-transporting ATPase subunit beta-3-like Neighboring gene otolin 1 Neighboring gene 40S ribosomal protein SA-like Neighboring gene POU domain, class 5, transcription factor 1-like Neighboring gene NMD3 ribosome export adaptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046285.1 Chromosome 2 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase small subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046285.1 Reference mRhiFer1_v1.p

    Range
    78674631..78703445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033133251.1 → XP_032989142.1  serine palmitoyltransferase small subunit B

    UniProtKB/TrEMBL
    A0A671DSJ3
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

  2. XM_033133241.1 → XP_032989132.1  serine palmitoyltransferase small subunit B

    UniProtKB/TrEMBL
    A0A671DSJ3
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

  3. XM_033133258.1 → XP_032989149.1  serine palmitoyltransferase small subunit B

    UniProtKB/TrEMBL
    A0A671DSJ3
    Related
    ENSRFEP00010003840.1, ENSRFET00010004210.2
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

  4. XM_033133227.1 → XP_032989118.1  serine palmitoyltransferase small subunit B

    UniProtKB/TrEMBL
    A0A671DSJ3
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

  5. XM_033133235.1 → XP_032989126.1  serine palmitoyltransferase small subunit B

    UniProtKB/TrEMBL
    A0A671DSJ3
    Related
    ENSRFEP00010036690.1, ENSRFET00010043357.1
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

  6. XM_033133267.1 → XP_032989158.1  serine palmitoyltransferase small subunit B

    UniProtKB/TrEMBL
    A0A671DSJ3
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

  7. XM_033133277.1 → XP_032989168.1  serine palmitoyltransferase small subunit B

    UniProtKB/TrEMBL
    A0A671DSJ3
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

  8. XM_033133286.1 → XP_032989177.1  serine palmitoyltransferase small subunit B

    UniProtKB/TrEMBL
    A0A671DSJ3
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like
Nucleotide Protein
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