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ATXN1L ataxin 1 like [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117034564, updated on 30-Mar-2024

Summary

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Gene symbol
ATXN1L
Gene description
ataxin 1 like
See related
EnsemblRapid:ENSRFEG00010008894
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See ATXN1L in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 15 NC_046298.1 (20852117..20863322, complement)

Chromosome 15 - NC_046298.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L36a-like Neighboring gene IST1 factor associated with ESCRT-III Neighboring gene zinc finger protein 821 Neighboring gene transfer RNA threonine (anticodon GGU) Neighboring gene IST1 homolog Neighboring gene 60S ribosomal protein L7-like Neighboring gene adaptor related protein complex 1 subunit gamma 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046298.1 Chromosome 15 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046298.1 Reference mRhiFer1_v1.p

    Range
    20852117..20863322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033127621.1 → XP_032983512.1  ataxin-1-like

    UniProtKB/TrEMBL
    A0A671EIC1
    Related
    ENSRFEP00010041704.1, ENSRFET00010040068.1
    Conserved Domains (2) summary
    pfam03154
    Location:89 → 253
    Atrophin-1; Atrophin-1 family
    pfam08517
    Location:468 → 578
    AXH; Ataxin-1 and HBP1 module (AXH)

  2. XM_033127622.1 → XP_032983513.1  ataxin-1-like

    UniProtKB/TrEMBL
    A0A671EIC1
    Conserved Domains (2) summary
    pfam03154
    Location:89 → 253
    Atrophin-1; Atrophin-1 family
    pfam08517
    Location:468 → 578
    AXH; Ataxin-1 and HBP1 module (AXH)

  3. XM_033127624.1 → XP_032983515.1  ataxin-1-like

    UniProtKB/TrEMBL
    A0A671EIC1
    Conserved Domains (2) summary
    pfam03154
    Location:89 → 253
    Atrophin-1; Atrophin-1 family
    pfam08517
    Location:468 → 578
    AXH; Ataxin-1 and HBP1 module (AXH)

  4. XM_033127623.1 → XP_032983514.1  ataxin-1-like

    UniProtKB/TrEMBL
    A0A671EIC1
    Related
    ENSRFEP00010013061.1, ENSRFET00010014293.2
    Conserved Domains (2) summary
    pfam03154
    Location:89 → 253
    Atrophin-1; Atrophin-1 family
    pfam08517
    Location:468 → 578
    AXH; Ataxin-1 and HBP1 module (AXH)

RNA

  1. XR_004425113.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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