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SYNJ1 synaptojanin 1 [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117034490, updated on 30-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
EnsemblRapid:ENSRFEG00010000545
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 2 NC_046285.1 (98740300..98823734, complement)

Chromosome 2 - NC_046285.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117036285 Neighboring gene cilia and flagella associated protein 298 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene exosomal polycystin 1 interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046285.1 Chromosome 2 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046285.1 Reference mRhiFer1_v1.p

    Range
    98740300..98823734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033127443.1 → XP_032983334.1  LOW QUALITY PROTEIN: synaptojanin-1

    UniProtKB/TrEMBL
    A0A7J8AGT1
    Related
    ENSRFEP00010037481.1, ENSRFET00010059477.1
    Conserved Domains (4) summary
    cd09098
    Location:573 → 908
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1171 → 1484
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:74 → 520
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:907 → 1048
    DUF1866; Domain of unknown function (DUF1866)
Nucleotide Protein
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