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SDC1 syndecan 1 [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117033046, updated on 30-Mar-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
See related
EnsemblRapid:ENSRFEG00010005688
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 13 NC_046296.1 (58662826..58686055)

Chromosome 13 - NC_046296.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene pumilio RNA binding family member 2 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene matrilin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046296.1 Chromosome 13 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046296.1 Reference mRhiFer1_v1.p

    Range
    58662826..58686055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033124929.1 → XP_032980820.1  syndecan-1

    UniProtKB/TrEMBL
    A0A671E518, A0A671ECS5
    Related
    ENSRFEP00010008337.2, ENSRFET00010009167.2
    Conserved Domains (1) summary
    pfam01034
    Location:245 → 308
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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