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COLEC11 collectin subfamily member 11 [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117032652, updated on 30-Mar-2024

Summary

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Gene symbol
COLEC11
Gene description
collectin subfamily member 11
See related
EnsemblRapid:ENSRFEG00010010705
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See COLEC11 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 13 NC_046296.1 (69596272..69621352, complement)

Chromosome 13 - NC_046296.1Genomic Context describing neighboring genes Neighboring gene doublecortin domain containing 2C Neighboring gene allantoicase Neighboring gene uncharacterized LOC117032653 Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene ribosomal protein S7 Neighboring gene ribonuclease H1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046296.1 Chromosome 13 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collectin-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046296.1 Reference mRhiFer1_v1.p

    Range
    69596272..69621352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033124195.1 → XP_032980086.1  collectin-11 isoform X2

    UniProtKB/TrEMBL
    A0A671ERR5, A0A7J7V7H5
    Related
    ENSRFEP00010015975.2, ENSRFET00010017443.2
    Conserved Domains (2) summary
    cd03591
    Location:180 → 295
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:73 → 127
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_033124194.1 → XP_032980085.1  collectin-11 isoform X1

    UniProtKB/TrEMBL
    A0A7J7V7H5
    Related
    ENSRFEP00010015946.2, ENSRFET00010017409.2
    Conserved Domains (2) summary
    cd03591
    Location:186 → 301
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:73 → 127
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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