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GLDC glycine decarboxylase [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117032416, updated on 30-Mar-2024

Summary

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Gene symbol
GLDC
Gene description
glycine decarboxylase
See related
EnsemblRapid:ENSRFEG00010013019
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See GLDC in Genome Data Viewer
Location:
chromosome: 12
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 12 NC_046295.1 (30442621..30518259)

Chromosome 12 - NC_046295.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L8-like Neighboring gene lysine demethylase 4C Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene DCN1-like protein 2 Neighboring gene ubiquitin like with PHD and ring finger domains 2 Neighboring gene TPD52 like 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046295.1 Chromosome 12 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycine dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine decarboxylation via glycine cleavage system IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycine cleavage complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycine dehydrogenase (decarboxylating), mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046295.1 Reference mRhiFer1_v1.p

    Range
    30442621..30518259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033123944.1 → XP_032979835.1  glycine dehydrogenase (decarboxylating), mitochondrial

    UniProtKB/TrEMBL
    A0A671F3J3
    Related
    ENSRFEP00010043477.1, ENSRFET00010061609.1
    Conserved Domains (1) summary
    PRK05367
    Location:63 → 1015
    PRK05367; aminomethyl-transferring glycine dehydrogenase
Nucleotide Protein
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