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ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117031856, updated on 30-Mar-2024

Summary

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Gene symbol
ABO
Gene description
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
See related
EnsemblRapid:ENSRFEG00010014997
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See ABO in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 12 NC_046295.1 (80705239..80725007)

Chromosome 12 - NC_046295.1Genomic Context describing neighboring genes Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) Neighboring gene surfeit 6 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene mediator complex subunit 22 Neighboring gene ribosomal protein L7a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046295.1 Chromosome 12 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histo-blood group ABO system transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046295.1 Reference mRhiFer1_v1.p

    Range
    80705239..80725007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033122679.1 → XP_032978570.1  histo-blood group ABO system transferase isoform X1

    UniProtKB/TrEMBL
    A0A671F9K2
    Conserved Domains (1) summary
    pfam03414
    Location:88 → 371
    Glyco_transf_6; Glycosyltransferase family 6

  2. XM_033122681.1 → XP_032978572.1  histo-blood group ABO system transferase isoform X3

    UniProtKB/TrEMBL
    A0A671F9K2
    Related
    ENSRFEP00010044056.1, ENSRFET00010059737.1
    Conserved Domains (1) summary
    pfam03414
    Location:76 → 359
    Glyco_transf_6; Glycosyltransferase family 6

  3. XM_033122678.1 → XP_032978569.1  histo-blood group ABO system transferase isoform X1

    UniProtKB/TrEMBL
    A0A671F9K2
    Conserved Domains (1) summary
    pfam03414
    Location:88 → 371
    Glyco_transf_6; Glycosyltransferase family 6

  4. XM_033122680.1 → XP_032978571.1  histo-blood group ABO system transferase isoform X2

    UniProtKB/TrEMBL
    A0A671F9K2
    Conserved Domains (1) summary
    pfam03414
    Location:88 → 370
    Glyco_transf_6; Glycosyltransferase family 6

  5. XM_033122682.1 → XP_032978573.1  histo-blood group ABO system transferase isoform X4

    UniProtKB/TrEMBL
    A0A671F9K2
    Conserved Domains (1) summary
    pfam03414
    Location:87 → 359
    Glyco_transf_6; Glycosyltransferase family 6
Nucleotide Protein
Heading Accession and Version

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