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HEYL hes related family bHLH transcription factor with YRPW motif like [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117027638, updated on 30-Mar-2024

Summary

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Gene symbol
HEYL
Gene description
hes related family bHLH transcription factor with YRPW motif like
See related
EnsemblRapid:ENSRFEG00010004468
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See HEYL in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 9 NC_046292.1 (27760162..27774885, complement)

Chromosome 9 - NC_046292.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase E-like Neighboring gene chromatin target of PRMT1 protein-like Neighboring gene small nucleolar RNA SNORA55 Neighboring gene poly(A) binding protein cytoplasmic 4 Neighboring gene 5'-nucleotidase, cytosolic IA Neighboring gene hippocalcin like 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046292.1 Chromosome 9 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in circulatory system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hairy/enhancer-of-split related with YRPW motif-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046292.1 Reference mRhiFer1_v1.p

    Range
    27760162..27774885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033115586.1 → XP_032971477.1  hairy/enhancer-of-split related with YRPW motif-like protein isoform X2

    Conserved Domains (3) summary
    smart00511
    Location:112 → 159
    ORANGE; Orange domain
    PHA03247
    Location:132 → 309
    PHA03247; large tegument protein UL36; Provisional
    cl00081
    Location:36 → 106
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  2. XM_033115585.1 → XP_032971476.1  hairy/enhancer-of-split related with YRPW motif-like protein isoform X1

    UniProtKB/TrEMBL
    A0A671E4I1
    Related
    ENSRFEP00010006573.1, ENSRFET00010007202.2
    Conserved Domains (3) summary
    smart00511
    Location:115 → 162
    ORANGE; Orange domain
    PHA03247
    Location:135 → 312
    PHA03247; large tegument protein UL36; Provisional
    cd11447
    Location:36 → 109
    bHLH-O_HEYL; basic helix-loop-helix-orange (bHLH-O) domain found in hairy/enhancer-of-split related with YRPW motif-like protein (HEYL) and similar proteins

  3. XM_033115587.1 → XP_032971478.1  hairy/enhancer-of-split related with YRPW motif-like protein isoform X3

    Related
    ENSRFEP00010050477.1, ENSRFET00010052692.1
    Conserved Domains (3) summary
    smart00511
    Location:87 → 134
    ORANGE; Orange domain
    PHA03247
    Location:107 → 284
    PHA03247; large tegument protein UL36; Provisional
    cd11447
    Location:8 → 81
    bHLH-O_HEYL; basic helix-loop-helix-orange (bHLH-O) domain found in hairy/enhancer-of-split related with YRPW motif-like protein (HEYL) and similar proteins
Nucleotide Protein
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