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NYX nyctalopin [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117023844, updated on 30-Mar-2024

Summary

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Gene symbol
NYX
Gene description
nyctalopin
See related
EnsemblRapid:ENSRFEG00010003367
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See NYX in Genome Data Viewer
Location:
chromosome: X
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) X NC_046284.1 (92450789..92466533, complement)

Chromosome X - NC_046284.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117030563 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene E3 ubiquitin-protein ligase RNF138-like Neighboring gene DEAD-box helicase 3 X-linked

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046284.1 Chromosome X Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046284.1 Reference mRhiFer1_v1.p

    Range
    92450789..92466533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033109078.1 → XP_032964969.1  nyctalopin

    UniProtKB/TrEMBL
    A0A671E2R9, A0A7J8AWH3
    Related
    ENSRFEP00010004832.2, ENSRFET00010005293.2
    Conserved Domains (5) summary
    sd00031
    Location:323 → 335
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:63 → 82
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:227 → 285
    LRR_8; Leucine rich repeat
    cl15307
    Location:331 → 365
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
    cl39015
    Location:68 → 313
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
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