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HPGDS hematopoietic prostaglandin D synthase [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117021896, updated on 30-Mar-2024

Summary

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Gene symbol
HPGDS
Gene description
hematopoietic prostaglandin D synthase
See related
EnsemblRapid:ENSRFEG00010000305
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See HPGDS in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 5 NC_046288.1 (47081265..47105292, complement)

Chromosome 5 - NC_046288.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-alpha 1-like Neighboring gene SNF2 related chromatin remodeling ATPase with DExD box 1 Neighboring gene PDZ and LIM domain 5 Neighboring gene pre-mRNA-splicing factor 38A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046288.1 Chromosome 5 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutathione transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutathione metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hematopoietic prostaglandin D synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046288.1 Reference mRhiFer1_v1.p

    Range
    47081265..47105292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033105269.1 → XP_032961160.1  hematopoietic prostaglandin D synthase isoform X2

    UniProtKB/TrEMBL
    A0A671DLW6
    Conserved Domains (2) summary
    cd10295
    Location:82 → 181
    GST_C_Sigma; C-terminal, alpha helical domain of Class Sigma Glutathione S-transferases
    cd03039
    Location:4 → 73
    GST_N_Sigma_like; GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of ...

  2. XM_033105268.1 → XP_032961159.1  hematopoietic prostaglandin D synthase isoform X1

    Related
    ENSRFEP00010000360.2, ENSRFET00010000407.2
    Conserved Domains (2) summary
    cd10295
    Location:90 → 189
    GST_C_Sigma; C-terminal, alpha helical domain of Class Sigma Glutathione S-transferases
    cd03039
    Location:12 → 81
    GST_N_Sigma_like; GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of ...

  3. XM_033105270.1 → XP_032961161.1  hematopoietic prostaglandin D synthase isoform X2

    UniProtKB/TrEMBL
    A0A671DLW6
    Conserved Domains (2) summary
    cd10295
    Location:82 → 181
    GST_C_Sigma; C-terminal, alpha helical domain of Class Sigma Glutathione S-transferases
    cd03039
    Location:4 → 73
    GST_N_Sigma_like; GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of ...
Nucleotide Protein
Heading Accession and Version

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