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HCFC1 host cell factor C1 [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117020659, updated on 30-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
See related
EnsemblRapid:ENSRFEG00010004542
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) X NC_046284.1 (6468561..6493557)

Chromosome X - NC_046284.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene transmembrane protein 187 Neighboring gene renin binding protein Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046284.1 Chromosome X Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046284.1 Reference mRhiFer1_v1.p

    Range
    6468561..6493557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033103298.1 → XP_032959189.1  host cell factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A671E8G0
    Related
    ENSRFEP00010006832.1, ENSRFET00010007488.2
    Conserved Domains (5) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:1482 → 1656
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1904 → 1945
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  2. XM_033103300.1 → XP_032959191.1  host cell factor 1 isoform X2

    Conserved Domains (5) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:1482 → 1656
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1903 → 1944
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  3. XM_033103302.1 → XP_032959193.1  host cell factor 1 isoform X3

    Conserved Domains (5) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:1407 → 1645
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:1903 → 1944
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  4. XM_033103305.1 → XP_032959196.1  host cell factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A7J8AV04
    Conserved Domains (4) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1860 → 1901
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  5. XM_033103307.1 → XP_032959198.1  host cell factor 1 isoform X5

    UniProtKB/TrEMBL
    B2KII8
    Conserved Domains (4) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1859 → 1900
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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