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UBE3C ubiquitin protein ligase E3C [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117018069, updated on 30-Mar-2024

Summary

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Gene symbol
UBE3C
Gene description
ubiquitin protein ligase E3C
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See UBE3C in Genome Data Viewer
Location:
chromosome: 26
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 26 NC_046309.1 (798369..881623, complement)

Chromosome 26 - NC_046309.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B6 Neighboring gene uncharacterized LOC117018223 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene motor neuron and pancreas homeobox 1 Neighboring gene nucleolar protein with MIF4G domain 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046309.1 Chromosome 26 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-protein ligase E3C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046309.1 Reference mRhiFer1_v1.p

    Range
    798369..881623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033098803.1 → XP_032954694.1  ubiquitin-protein ligase E3C isoform X1

    UniProtKB/TrEMBL
    A0A671FDA2, A0A7J7RJV7
    Conserved Domains (2) summary
    smart00015
    Location:47 → 64
    IQ; Calmodulin-binding motif
    cd00078
    Location:726 → 1082
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  2. XM_033098804.1 → XP_032954695.1  ubiquitin-protein ligase E3C isoform X2

    UniProtKB/TrEMBL
    A0A7J7RJV7
    Conserved Domains (1) summary
    cd00078
    Location:610 → 966
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
Nucleotide Protein
Heading Accession and Version

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