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DGCR2 DiGeorge syndrome critical region gene 2 [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117017240, updated on 30-Mar-2024

Summary

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Gene symbol
DGCR2
Gene description
DiGeorge syndrome critical region gene 2
See related
EnsemblRapid:ENSRFEG00010020348
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See DGCR2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 25 NC_046308.1 (23690358..23768977, complement)

Chromosome 25 - NC_046308.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117017267 Neighboring gene carbonic anhydrase 15-like Neighboring gene U6 spliceosomal RNA Neighboring gene testis specific serine kinase 1B Neighboring gene testis specific serine kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046308.1 Chromosome 25 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046308.1 Reference mRhiFer1_v1.p

    Range
    23690358..23768977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033097213.1 → XP_032953104.1  integral membrane protein DGCR2/IDD isoform X3

    UniProtKB/TrEMBL
    A0A671G4E4
    Related
    ENSRFEP00010047074.1, ENSRFET00010039490.1
    Conserved Domains (3) summary
    cd03599
    Location:109 → 261
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:265 → 323
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  2. XM_033097212.1 → XP_032953103.1  integral membrane protein DGCR2/IDD isoform X2

    UniProtKB/TrEMBL
    A0A671G4E4, A0A7J7RNV2
    Related
    ENSRFEP00010040970.1, ENSRFET00010046491.1
    Conserved Domains (2) summary
    cd03599
    Location:68 → 220
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:224 → 282
    VWC; von Willebrand factor (vWF) type C domain

  3. XM_033097211.1 → XP_032953102.1  integral membrane protein DGCR2/IDD isoform X1

    UniProtKB/TrEMBL
    A0A671G4E4, A0A7J7RPG0
    Related
    ENSRFEP00010049091.1, ENSRFET00010043539.1
    Conserved Domains (3) summary
    cd03599
    Location:109 → 261
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:265 → 323
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
Nucleotide Protein
Heading Accession and Version

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