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SPTLC3 serine palmitoyltransferase long chain base subunit 3 [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117016210, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC3
Gene description
serine palmitoyltransferase long chain base subunit 3
See related
EnsemblRapid:ENSRFEG00010005780
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See SPTLC3 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 23 NC_046306.1 (33444322..33594180)

Chromosome 23 - NC_046306.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene 26S proteasome regulatory subunit 4-like Neighboring gene isthmin 1 Neighboring gene taspase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046306.1 Chromosome 23 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046306.1 Reference mRhiFer1_v1.p

    Range
    33444322..33594180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033095399.1 → XP_032951290.1  serine palmitoyltransferase 3

    UniProtKB/TrEMBL
    A0A671E9M5
    Related
    ENSRFEP00010008453.1, ENSRFET00010009293.2
    Conserved Domains (1) summary
    cl18945
    Location:57 → 534
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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