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RBPJL recombination signal binding protein for immunoglobulin kappa J region like [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117015637, updated on 30-Mar-2024

Summary

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Gene symbol
RBPJL
Gene description
recombination signal binding protein for immunoglobulin kappa J region like
See related
EnsemblRapid:ENSRFEG00010020135
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
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Genomic context

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See RBPJL in Genome Data Viewer
Location:
chromosome: 23
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 23 NC_046306.1 (12600536..12608108, complement)

Chromosome 23 - NC_046306.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L15-like Neighboring gene syndecan 4 Neighboring gene matrilin 4 Neighboring gene antileukoproteinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046306.1 Chromosome 23 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
recombining binding protein suppressor of hairless-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046306.1 Reference mRhiFer1_v1.p

    Range
    12600536..12608108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033094257.1 → XP_032950148.1  recombining binding protein suppressor of hairless-like protein

    UniProtKB/TrEMBL
    A0A671FYX1
    Related
    ENSRFEP00010030664.1, ENSRFET00010033260.2
    Conserved Domains (3) summary
    cd01176
    Location:395 → 491
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:248 → 373
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:83 → 215
    LAG1-DNAbind; LAG1, DNA binding
Nucleotide Protein
Heading Accession and Version

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