U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NCSTN nicastrin [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

Gene ID: 117015173, updated on 30-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
NCSTN
Gene description
nicastrin
See related
EnsemblRapid:ENSRFEG00010017685
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus ferrumequinum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NCSTN in Genome Data Viewer
Location:
chromosome: 22
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 22 NC_046305.1 (28203453..28217743, complement)

Chromosome 22 - NC_046305.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B2-like Neighboring gene VANGL planar cell polarity protein 2 Neighboring gene nescient helix-loop-helix 1 Neighboring gene COPI coat complex subunit alpha Neighboring gene peroxisomal biogenesis factor 19

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_046305.1 Chromosome 22 Reference mRhiFer1_v1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Notch receptor processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nicastrin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRhiFer1_v1.p

Genomic

  1. NC_046305.1 Reference mRhiFer1_v1.p

    Range
    28203453..28217743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033093632.1 → XP_032949523.1  nicastrin isoform X1

    UniProtKB/TrEMBL
    A0A671FVN9, A0A7J7SYX7
    Related
    ENSRFEP00010026623.2, ENSRFET00010028930.2
    Conserved Domains (1) summary
    cd03881
    Location:53 → 655
    M28_Nicastrin; M28 Zn-peptidase nicastrin, a main component of gamma-secretase complex

  2. XM_033093634.1 → XP_032949525.1  nicastrin isoform X2

    UniProtKB/TrEMBL
    A0A671FVN9, A0A7J7SXY4
    Conserved Domains (1) summary
    cd03881
    Location:1 → 547
    M28_Nicastrin; M28 Zn-peptidase nicastrin, a main component of gamma-secretase complex
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.