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LOC116957716 secreted frizzled-related protein 1-like [ Petromyzon marinus (sea lamprey) ]

Gene ID: 116957716, updated on 1-Aug-2024

Summary

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Gene symbol
LOC116957716
Gene description
secreted frizzled-related protein 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Petromyzon marinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
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Genomic context

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See LOC116957716 in Genome Data Viewer
Location:
chromosome: 83
Exon count:
7
Annotation release Status Assembly Chr Location
100 current kPetMar1.pri (GCF_010993605.1) 83 NC_046151.1 (46229..70657, complement)

Chromosome 83 - NC_046151.1Genomic Context describing neighboring genes Neighboring gene fibroin heavy chain-like Neighboring gene golgin subfamily A member 7-like Neighboring gene putative lysozyme-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046151.1 Chromosome 83 Reference kPetMar1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference kPetMar1.pri Primary Assembly

Genomic

  1. NC_046151.1 Reference kPetMar1.pri Primary Assembly

    Range
    46229..70657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032980036.1 → XP_032835927.1  secreted frizzled-related protein 1-like

    UniProtKB/TrEMBL
    A0AAJ7XJ03
    Conserved Domains (2) summary
    cl02447
    Location:202 → 320
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
    cl02512
    Location:365 → 517
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...
Nucleotide Protein
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