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LOC116957458 TNF receptor-associated factor 2-like [ Petromyzon marinus (sea lamprey) ]

Gene ID: 116957458, updated on 1-Aug-2024

Summary

Gene symbol
LOC116957458
Gene description
TNF receptor-associated factor 2-like
See related
EnsemblRapid:ENSPMAG00000032987
Gene type
protein coding
RefSeq status
MODEL
Organism
Petromyzon marinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
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Genomic context

Location:
chromosome: 74
Exon count:
14
Annotation release Status Assembly Chr Location
100 current kPetMar1.pri (GCF_010993605.1) 74 NC_046142.1 (1951464..1984427, complement)

Chromosome 74 - NC_046142.1Genomic Context describing neighboring genes Neighboring gene L-selectin-like Neighboring gene L-selectin-like Neighboring gene uncharacterized LOC116957454 Neighboring gene rab GTPase-activating protein 1-like Neighboring gene surfeit 6

Genomic regions, transcripts, and products

Genomic Sequence:
NC_046142.1 Chromosome 74 Reference kPetMar1.pri Primary Assembly

General gene information

General protein information

Preferred Names
TNF receptor-associated factor 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference kPetMar1.pri Primary Assembly

Genomic

  1. NC_046142.1 Reference kPetMar1.pri Primary Assembly

    Range
    1951464..1984427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032979616.1XP_032835507.1  TNF receptor-associated factor 2-like isoform X4

    UniProtKB/TrEMBL
    A0AAJ7XIL3
    Related
    ENSPMAP00000047172.1, ENSPMAT00000065883.1
    Conserved Domains (5) summary
    PLN03086
    Location:184257
    PLN03086; PRLI-interacting factor K; Provisional
    cl02446
    Location:443630
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:398458
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl17238
    Location:80106
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:227284
    zf-TRAF; TRAF-type zinc finger
  2. XM_032979613.1XP_032835504.1  TNF receptor-associated factor 2-like isoform X2

    UniProtKB/TrEMBL
    A0AAJ7UIS4
    Conserved Domains (5) summary
    PLN03086
    Location:188261
    PLN03086; PRLI-interacting factor K; Provisional
    cl02446
    Location:447634
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:402462
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl17238
    Location:84110
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:231288
    zf-TRAF; TRAF-type zinc finger
  3. XM_032979617.1XP_032835508.1  TNF receptor-associated factor 2-like isoform X5

    UniProtKB/TrEMBL
    A0AAJ7UFU0
    Conserved Domains (5) summary
    PLN03086
    Location:132205
    PLN03086; PRLI-interacting factor K; Provisional
    cl02446
    Location:391578
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:346406
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl17238
    Location:2854
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:175232
    zf-TRAF; TRAF-type zinc finger
  4. XM_032979612.1XP_032835503.1  TNF receptor-associated factor 2-like isoform X2

    UniProtKB/TrEMBL
    A0AAJ7UIS4
    Related
    ENSPMAP00000029684.1, ENSPMAT00000059697.1
    Conserved Domains (5) summary
    PLN03086
    Location:188261
    PLN03086; PRLI-interacting factor K; Provisional
    cl02446
    Location:447634
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:402462
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl17238
    Location:84110
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:231288
    zf-TRAF; TRAF-type zinc finger
  5. XM_032979618.1XP_032835509.1  TNF receptor-associated factor 2-like isoform X5

    UniProtKB/TrEMBL
    A0AAJ7UFU0
    Conserved Domains (5) summary
    PLN03086
    Location:132205
    PLN03086; PRLI-interacting factor K; Provisional
    cl02446
    Location:391578
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:346406
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl17238
    Location:2854
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:175232
    zf-TRAF; TRAF-type zinc finger
  6. XM_032979614.1XP_032835505.1  TNF receptor-associated factor 2-like isoform X2

    UniProtKB/TrEMBL
    A0AAJ7UIS4
    Conserved Domains (5) summary
    PLN03086
    Location:188261
    PLN03086; PRLI-interacting factor K; Provisional
    cl02446
    Location:447634
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:402462
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl17238
    Location:84110
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:231288
    zf-TRAF; TRAF-type zinc finger
  7. XM_032979615.1XP_032835506.1  TNF receptor-associated factor 2-like isoform X3

    UniProtKB/TrEMBL
    A0AAJ7XIB5
    Conserved Domains (5) summary
    COG5236
    Location:139201
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    cl02446
    Location:447634
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:402462
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl17238
    Location:137163
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:231288
    zf-TRAF; TRAF-type zinc finger
  8. XM_032979611.1XP_032835502.1  TNF receptor-associated factor 2-like isoform X1

    UniProtKB/TrEMBL
    A0AAJ7UIM5
    Related
    ENSPMAP00000029292.1, ENSPMAT00000028799.1
    Conserved Domains (5) summary
    PLN03086
    Location:241314
    PLN03086; PRLI-interacting factor K; Provisional
    cl02446
    Location:500687
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:455515
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl17238
    Location:137163
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:284341
    zf-TRAF; TRAF-type zinc finger