U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SNX25 sorting nexin 25 [ Petromyzon marinus (sea lamprey) ]

Gene ID: 116955671, updated on 1-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
SNX25
Gene description
sorting nexin 25
See related
EnsemblRapid:ENSPMAG00000046394
Gene type
protein coding
RefSeq status
MODEL
Organism
Petromyzon marinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SNX25 in Genome Data Viewer
Location:
chromosome: 61
Exon count:
20
Annotation release Status Assembly Chr Location
100 current kPetMar1.pri (GCF_010993605.1) 61 NC_046129.1 (765236..794165)

Chromosome 61 - NC_046129.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid receptor subunit gamma-2-like Neighboring gene OCA2 melanosomal transmembrane protein Neighboring gene nuclear transport factor 2 like export factor 2 Neighboring gene ALG8 alpha-1,3-glucosyltransferase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_046129.1 Chromosome 61 Reference kPetMar1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sorting nexin-25

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference kPetMar1.pri Primary Assembly

Genomic

  1. NC_046129.1 Reference kPetMar1.pri Primary Assembly

    Range
    765236..794165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032976902.1 → XP_032832793.1  sorting nexin-25

    UniProtKB/TrEMBL
    A0AAJ7UAM2
    Conserved Domains (4) summary
    cd06878
    Location:770 → 893
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:175 → 330
    PXA; PXA domain
    pfam08628
    Location:971 → 1077
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:471 → 578
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  2. XM_032976904.1 → XP_032832795.1  sorting nexin-25

    UniProtKB/TrEMBL
    A0AAJ7UAM2
    Conserved Domains (4) summary
    cd06878
    Location:770 → 893
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:175 → 330
    PXA; PXA domain
    pfam08628
    Location:971 → 1077
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:471 → 578
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  3. XM_032976903.1 → XP_032832794.1  sorting nexin-25

    UniProtKB/TrEMBL
    A0AAJ7UAM2
    Conserved Domains (4) summary
    cd06878
    Location:770 → 893
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:175 → 330
    PXA; PXA domain
    pfam08628
    Location:971 → 1077
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:471 → 578
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  4. XM_032976905.1 → XP_032832796.1  sorting nexin-25

    UniProtKB/TrEMBL
    A0AAJ7UAM2
    Conserved Domains (4) summary
    cd06878
    Location:770 → 893
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:175 → 330
    PXA; PXA domain
    pfam08628
    Location:971 → 1077
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:471 → 578
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  5. XM_032976906.1 → XP_032832797.1  sorting nexin-25

    UniProtKB/TrEMBL
    A0AAJ7UAM2
    Conserved Domains (4) summary
    cd06878
    Location:770 → 893
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:175 → 330
    PXA; PXA domain
    pfam08628
    Location:971 → 1077
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:471 → 578
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  6. XM_032976907.1 → XP_032832798.1  sorting nexin-25

    UniProtKB/TrEMBL
    A0AAJ7UAM2
    Conserved Domains (4) summary
    cd06878
    Location:770 → 893
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:175 → 330
    PXA; PXA domain
    pfam08628
    Location:971 → 1077
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:471 → 578
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  7. XM_032976908.1 → XP_032832799.1  sorting nexin-25

    UniProtKB/TrEMBL
    A0AAJ7UAM2
    Conserved Domains (4) summary
    cd06878
    Location:770 → 893
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:175 → 330
    PXA; PXA domain
    pfam08628
    Location:971 → 1077
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:471 → 578
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  8. XM_032976910.1 → XP_032832801.1  sorting nexin-25

    UniProtKB/TrEMBL
    A0AAJ7UAM2
    Related
    ENSPMAP00000047245.1, ENSPMAT00000029352.1
    Conserved Domains (4) summary
    cd06878
    Location:770 → 893
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:175 → 330
    PXA; PXA domain
    pfam08628
    Location:971 → 1077
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:471 → 578
    RGS; Regulator of G protein signaling (RGS) domain superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.