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SGCG sarcoglycan gamma [ Petromyzon marinus (sea lamprey) ]

Gene ID: 116954787, updated on 1-Aug-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
See related
EnsemblRapid:ENSPMAG00000002051
Gene type
protein coding
RefSeq status
MODEL
Organism
Petromyzon marinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
100 current kPetMar1.pri (GCF_010993605.1) 3 NC_046071.1 (15119866..15156681, complement)

Chromosome 3 - NC_046071.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116954746 Neighboring gene RAD1 checkpoint DNA exonuclease Neighboring gene CLN3 lysosomal/endosomal transmembrane protein, battenin Neighboring gene centrosomal AT-AC splicing factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046071.1 Chromosome 3 Reference kPetMar1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference kPetMar1.pri Primary Assembly

Genomic

  1. NC_046071.1 Reference kPetMar1.pri Primary Assembly

    Range
    15119866..15156681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032975615.1 → XP_032831506.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0AAJ7U866, S4RAM2
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 281
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_032975599.1 → XP_032831490.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0AAJ7U866, S4RAM2
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 281
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_032975608.1 → XP_032831499.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0AAJ7U866, S4RAM2
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 281
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_032975621.1 → XP_032831512.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0AAJ7U866, S4RAM2
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 281
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_032975629.1 → XP_032831520.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0AAJ7U866, S4RAM2
    Related
    ENSPMAP00000045835.1, ENSPMAT00000052268.1
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 281
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_032975639.1 → XP_032831530.1  gamma-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0AAJ7XEM5, S4RAM2
    Conserved Domains (1) summary
    pfam04790
    Location:56 → 313
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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