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LOC116939388 transforming growth factor beta-2 proprotein-like [ Petromyzon marinus (sea lamprey) ]

Gene ID: 116939388, updated on 1-Aug-2024

Summary

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Gene symbol
LOC116939388
Gene description
transforming growth factor beta-2 proprotein-like
See related
EnsemblRapid:ENSPMAG00000010440
Gene type
protein coding
RefSeq status
MODEL
Organism
Petromyzon marinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
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Genomic context

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See LOC116939388 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
100 current kPetMar1.pri (GCF_010993605.1) 6 NC_046074.1 (2309694..2323847, complement)

Chromosome 6 - NC_046074.1Genomic Context describing neighboring genes Neighboring gene N-acetylated alpha-linked acidic dipeptidase like 1 Neighboring gene potassium channel subfamily K member 10-like Neighboring gene ribosomal RNA processing 15 homolog Neighboring gene uncharacterized LOC116939390

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046074.1 Chromosome 6 Reference kPetMar1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type II transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type III transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transforming growth factor beta-2 proprotein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference kPetMar1.pri Primary Assembly

Genomic

  1. NC_046074.1 Reference kPetMar1.pri Primary Assembly

    Range
    2309694..2323847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032947661.1 → XP_032803552.1  transforming growth factor beta-2 proprotein-like

    UniProtKB/TrEMBL
    A0AAJ7SS77
    Related
    ENSPMAP00000011421.2, ENSPMAT00000011467.2
    Conserved Domains (2) summary
    cl40434
    Location:346 → 442
    TGF_beta_SF; transforming growth factor beta (TGF-beta) like domain found in TGF-beta superfamily
    pfam00688
    Location:32 → 277
    TGFb_propeptide; TGF-beta propeptide
Nucleotide Protein
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