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ttv exostosin glycosyltransferase 1 ttv [ Daphnia magna ]

Gene ID: 116933752, updated on 10-Oct-2024

Summary

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Gene symbol
ttv
Gene description
exostosin glycosyltransferase 1 ttv
See related
EnsemblRapid:LOC116933752
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
Orthologs
fruit fly all
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Genomic context

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See ttv in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
11
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG1 NC_059182.1 (14251563..14266265, complement)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG1 NC_046174.1 (9739884..9754561, complement)

Linkage Group LG1 - NC_059182.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116933729 Neighboring gene prolyl endopeptidase Neighboring gene uncharacterized LOC116933807 Neighboring gene uncharacterized LOC116933816

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Species-specific transcriptomic responses in Daphnia magna exposed to a bio-plastic production intermediate. Swart E, et al. Environ Pollut, 2019 Sep. PMID 31158668
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059182.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    14251563..14266265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032941476.2 → XP_032797367.1  exostosin-1 isoform X3

    UniProtKB/TrEMBL
    A0A0P5NXH4
    Related
    XP_032797367.1, XM_032941476.2
    Conserved Domains (2) summary
    pfam03016
    Location:77 → 362
    Exostosin; Exostosin family
    pfam09258
    Location:456 → 710
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_032941469.2 → XP_032797360.1  exostosin-1 isoform X2

    UniProtKB/TrEMBL
    A0A0P5NXH4
    Related
    XP_032797360.1, XM_032941469.2
    Conserved Domains (2) summary
    pfam03016
    Location:90 → 375
    Exostosin; Exostosin family
    pfam09258
    Location:469 → 722
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_032941463.2 → XP_032797354.1  exostosin-1 isoform X1

    UniProtKB/TrEMBL
    A0A0P5NXH4
    Related
    XP_032797354.1, XM_032941463.2
    Conserved Domains (2) summary
    pfam03016
    Location:90 → 375
    Exostosin; Exostosin family
    pfam09258
    Location:469 → 723
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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